Publications - Supplemental material

Please find below supplemental material corresponding to publications of our group. Currently, we list 61 supplements. If you have problems accessing electronic information, please let us know:

©NOTICE: All documents are copyrighted by the authors; If you would like to use all or a portion of any paper, please contact the author.

This supplement is also available at http://www.bioinf.uni-leipzig.de/Publications/SUPPLEMENTS/07-011
You may use this URL to cite or link to us.

BIOINF 07-011: Homology Search with Fragmented Nucleic Acid Sequence Patterns

Axel Mosig, Julian L. Chen, Peter F. Stadler

Software

  • fragrep-2.tar.gz
  • Quick installation guide:

    Type
  • tar xzf fragrep-2.tar.gz
  • cd fragrep-2
  • make release
  • RNAse MPR RNAs

  • Search Pattern for yeast [fragrep pattern format]
  • Search Pattern for amphioxus and Saccoglossus kovalevskii [fragrep pattern format]
  • MRP candidates in amphioxus and Saccoglossus kovalevskii [fasta format]
  • Aligned matches of amphioxus and Saccoglossus kovalevskii [clustalw format]
  • Vault RNAs

  • Search Pattern [fragrep pattern format]
  • Alignmentof known sequences and new candidates [Stockholm format]