Bioinformatik

Structural profiles of miRNA families from pairwise clustering

Authors: 
Kaczkowski, Bogumil
Torarinsson, Elfar
Reiche, Kristin
Havgaard, Jakob Hull
Stadler, Peter F.
Gorodkin, Jan
Year: 
2008

Approximate Graph Products

Authors: 
Hellmuth, Marc
Imrich, Wilfried
Klöckl, Werner
Stadler, Peter F.
Year: 
2008

Early Replicons: Origin and Evolution

Authors: 
Schuster, Peter
Stadler, Peter F.
Year: 
2008

HLA-DRB1*0401 and HLA-DRB1*0408 are strongly associated with the development of antibodies against interferon-beta therapy in multiple sclerosis

Authors: 
Hoffmann, Steve
Cepok, Sabine
Grummel, Verena
Lehmann-Horn, Klaus
Hackermüller, Jörg
Stadler, Peter F.
Hartung, Hans-Peter
Berthele, Achim
Deisenhammer, Florian
Wasmuth, Ralf
Hemmer, Bernhard
Year: 
2008

Universal Scaling in the Branching of the Tree of Life

Authors: 
Herrada, E. Alejandro
Tessone, Claudio J.
Klemm, Konstantin
Eguiluz, Víctor M.
Hernandez-Garcia, Emilio
Duarte, Carlos M.
Year: 
2008

Rate variations, phylogenetics, and partial orders.

Authors: 
Prohaska, Sonja J.
Fritzsch, Guido
Stadler, Peter F.
Year: 
2008

Noisy: identification of problematic columns in multiple sequence alignments

Authors: 
Dress, A W M.
Flamm, Christoph
Fritzsch, Guido
Gruenewald, St.
Kruspe, M.
Prohaska, Sonja J.
Stadler, Peter F.
Year: 
2008

Arthropod 7SK RNA

Authors: 
Gruber, Andreas R.
Kilgus, Carsten
Mosig, Axel
Hofacker, Ivo L.
Hennig, Wolfgang
Stadler, Peter F.
Year: 
2008

Transcriptional regulation of the human CD97 promoter by Sp1/Sp3 in smooth muscle cells.

Authors: 
Wobus, M.
Wandel, E.
Prohaska, Sonja J.
Findeiß, Sven
Tschöp, K.
Aust, G.
Year: 
2008

Translational Control by RNA-RNA Interaction: Improved Computation of RNA-RNA Binding Thermodynamics

Authors: 
Mückstein, Ulrike
Tafer, Hakim
Bernhart, Stephan
Hernandez-Rosales, Maribel
Vogel, Jörg
Stadler, Peter F.
Hofacker, Ivo L.
Year: 
2008

``Genes''

Authors: 
Prohaska, Sonja J.
Stadler, Peter F.
Year: 
2008

Small ncRNA transcriptome analysis from Aspergillus fumigatus suggests a novel mechanism for regulation of protein-synthesis

Authors: 
Jöchl, Christoph
Rederstorff, Mathieu
Hertel, Jana
Stadler, Peter F.
Hofacker, Ivo L.
Schrettl, Markus
Haas, Hubertus
Hüttenhofer, Alexander
Year: 
2008

A survey of nematode SmY RNAs

Authors: 
Jones, Thomas A.
Otto, Wolfgang
Marz, Manja
Eddy, Sean R.
Stadler, Peter F.
Year: 
2009

Hox cluster duplications in the basal teleost Hiodon alosoides (Osteoglossomorpha)

Authors: 
Chambers, Karen E.
McDaniell, Ryan
Raincrow, Jeremy F.
Deshmukh, Maya
Stadler, Peter F.
Chiu, Chi-hua
Year: 
2009

Non-Coding RNA Annotation of the Genome of Trichoplax adhaerens

Authors: 
Hertel, Jana
Jong, Danielle de
Marz, Manja
Rose, Dominic
Tafer, Hakim
Tanzer, Andrea
Schierwater, Bernd
Stadler, Peter F.
Year: 
2009

tRNAdb 2009: compilation of tRNA sequences and tRNA genes

Authors: 
Jühling, Frank
Mörl, Mario
Hartmann, Roland K.
Sprinzl, Mathias
Stadler, Peter F.
Pütz, Joern
Year: 
2009

Conserved Introns Reveal Novel Transcripts in Drosophila melanogaster.

Authors: 
Hiller, Michael
Findeiß, Sven
Nickel, C.
Lein, S.
Marz, M.
Rose, Dominic
Schulz, C.
Backofen, Rolf
Prohaska, Sonja J.
Reuter, G.
Stadler, Peter F.
Year: 
2009

A note on fundamental, non-fundamental, and robust cycle bases

Authors: 
Klemm, Konstantin
Stadler, Peter F.
Year: 
2009

A Topological Approach to Chemical Organization

Authors: 
Benkö, Gil
Centler, Florian
Dittrich, Peter
Flamm, Christoph
Stadler, Bärbel M. R.
Stadler, Peter F.
Year: 
2009

Discovering cis-regulatory modules by optimizing barbecues

Authors: 
Mosig, Axel
Biyikoglu, Türker
Prohaska, Sonja J.
Stadler, Peter F.
Year: 
2009

RNA maps reveal new RNA classes and a possible function for pervasive transcription

Authors: 
Kapranov, Philipp
Chen, Julian L.
Dike, S.
Nix, DA.
Duttagupta, R.
Willingham, AT.
Stadler, Peter F.
Hertel, Jana
Hackermüller, Jörg
Hofacker, Ivo L.
Bell, I.
Cheung, E.
Drenkow, Jorg
Dumais, E.
Patel, S.
Helt, G.
Ganesh, M.
Ghosh, S.
Piccolboni, A.
Sementchenko, V.
Tammana, H.
Gingeras, TR.
Year: 
2007

Induction of microRNA-21 contributes to the oncogenic potential of Stat3

Authors: 
Löffler, D.
Brocke-Heidrich, K.
Pfeifer, G.
Stocsits, Claudia
Hackermüller, Jörg
Kretzschmar, A.
Burger, R.
Gramatzki, M.
Blumert, C.
Bauer, K.
Cvijic, H.
Stadler, Peter F.
Horn, F.
Year: 
2007

Paired-End Mapping Reveals Extensive Structural Variation in the Human Genome

Authors: 
Korbel, Jan O.
Urban, Alexander Eckehart
Affourtit, Jason P.
Godwin, Brian
Grubert, Fabian
Simons, Jan Fredrik
Kim, Philip M.
Palejev, Dean
Carriero, Nicholas J.
Du, Lei
Taillon, Bruce E.
Chen, Zhoutao
Tanzer, Andrea
Saunders, A. C. Eugenia
Chi, Jianxiang
Yang, Fengtang
Carter, Nigel P.
Hurles, Matthew E.
Weissman, Sherman M.
Harkins, Timothy T.
Gerstein, Mark B.
Egholm, Michael
Snyder, Michael
Year: 
2007

Evolution of genes and genomes on the Drosophila phylogeny

Authors: 
Drosophila 12 Genomes Consortium
Year: 
2007

Synchroma grande spec. nov. (Synchromophyceae class. nov., Heterokontophyta): An Amoeboid Marine Alga with Unique Plastid Complexes

Authors: 
Horn, Sven
Ehlers, K.
Fritzsch, Guido
Candelaria Gil-Rodríguez, M.
Wilhelm, Ch.
Schnetter, R.
Year: 
2007
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